Scale and straighten out VisiumHD coordinates

Scale and straighten out VisiumHD coordinates

Usage

realignVisiumHD(spe, distPoint = NULL)

Arguments

spe

A SpatialExperiment object.

distPoint

Numeric. Desired point to point distance. If NULL, will try to determine the bin level of spe and use that.

Details

This function rescale the distance between points to 8um (or other value) to matchthe real distance. In addition, Visium spots have a slight tilt to them which this function will also fix