Read Visium output into spe
Usage
readVisium(
dir,
sample_id = "sample01",
count = NULL,
coord = NULL,
image = NULL,
scale_factors = NULL
)
Arguments
- dir
directory containing the Visium files
- sample_id
Name of the sample.
- count
Name of the h5 file with the count assay.
- coord
Name of the csv file with the tissue coordinates
- image
Names of the image files.
- scale_factors
Names of the scale factors file