Read Proseg V2 output into spe
Usage
readProseg(
dir,
sample_id = "sample01",
count = "expected-counts\\.(csv|mtx)\\.gz",
coord = "cell-metadata.csv.gz",
gene = "gene-metadata.csv.gz",
coordNames = c("centroid_x", "centroid_y", "centroid_z")
)
Arguments
- dir
directory containing the Proseg files
- sample_id
Name of the sample.
- count
Name of the file with the count assay.
- coord
Name of the file with the tissue coordinates
- gene
Name of the file with the gene metadata. This
- coordNames
Name of the coordinates for the spe
Details
This does not work on zarr file output of proseg V3