Plot grid-based density.

Plot grid-based density.

Usage

plotDensity(spe, coi = NULL, probs = 0.5, reverseY = NULL, ...)

Arguments

spe

A SpatialExperiment object.

coi

A character vector of cell types of interest (COIs) to be plotted. Default to all cell types.

probs

Numeric value between 0 and 1, used for filtering uninformative grid, default is 0.5.

reverseY

Logical. Whether to reverse Y coordinates. Default is TRUE if the spe contains an image (even if not plotted) and FALSE if otherwise.

...

Parameters pass to plotGrid

Value

A ggplot object.

Examples

data("xenium_bc_spe")

spe <- gridDensity(spe)

plotDensity(spe, coi = "Breast cancer")


plotDensity(spe, coi = "Fibroblasts")