Plot grid-based density.

Plot grid-based density.

Usage

plotDensity(spe, coi, probs = 0.8)

Arguments

spe

A SpatialExperiment object.

coi

A character vector of cell types of interest (COIs).

probs

Numeric value between 0 and 1, used for filtering uninformative grid, default is 0.8.

Value

A ggplot object.

Examples

data("xenium_bc_spe")

spe <- gridDensity(spe)

plotDensity(spe, coi = "Breast cancer")
#> Warning: Removed 44 rows containing missing values or values outside the scale range
#> (`geom_tile()`).


plotDensity(spe, coi = "Fibroblasts")
#> Warning: Removed 9 rows containing missing values or values outside the scale range
#> (`geom_tile()`).