scider: Spatial cell-type inter-correlation by density in R.

scider implements functions to analyse spatial transcriptomics data with cell type annotations by performing cell type correlation via density estimation and cell type co-localization via real number distance. Functions include density estimation, statistical modelling and visualizations.

Install released version form Bioconductor

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scider")

Install development version from GitHub

library(devtools)   
devtools::install_github("ChenLaboratory/scider")